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Laboratory Publications in 2014

Published on 4 January 2019

Alban C, Tardif M, Mininno M, Brugière S, Gilgen A, Ma S, Mazzoleni M, Gigarel O, Martin-Laffon J, Ferro M and Ravanel S
Uncovering the protein lysine and arginine methylation network in Arabidopsis chloroplasts.
PLoS One, 2014, 9(4): e95512

Aranjuelo I, Doustaly F, Cela J, Porcel R, Müller M, Aroca R, Munné-Bosch S and Bourguignon J
Glutathione and transpiration as key factors conditioning oxidative stress in Arabidopsis thaliana exposed to uranium.
Planta, 2014, 239(4): 817-830

Arnaud C, Clément M, Thibaud MC, Javot H, Chiarenza S, Delannoy E, Revol J, Soreau P, Balzergue S, Block MA, Maréchal E, Desnos T and Nussaume L

Identification of phosphatin, a drug alleviating Pi starvation responses in Arabidopsis.
Plant Physiology, 2014, 166(3): 1479-1491

Bakari S, André F, Seigneurin-Berny D, Delaforge M, Rolland N and Frelet-Barrand A
Lactococcus lactis, recent developments in functional expression of membrane proteins. In Membrane Proteins Production for Structural Analysis. Mus-Veteau I. (Ed.). Springer, New-York, USA, 2014, Chapter 5. pp 107-132

Besnard F, Refahi Y, Morin V, Marteaux B, Brunoud G, Chambrier P, Rozier F, Mirabet V, Legrand J, Lainé S, Thévenon E, Farcot E, Cellier C, Das P, Bishopp A, Dumas R, Parcy F, Helariutta Y, Boudaoud A, Godin C, Traas J, Guédon Y and Vernoux T
Cytokinin signalling inhibitory fields provide robustness to phyllotaxis.
Nature, 2014, 505(7483): 417-421

Blanchoin L, Boujemaa-Paterski R, Sykes C and Plastino J
Actin dynamics, architecture, and mechanics in cell motility.
Physiological Reviews, 2014, 94(1): 235-263

Botté C and Maréchal E
Plastids with or without galactoglycerolipids.
Trends in Plant Science, 2014, 19(2): 71-78

Boudière L and Maréchal E
Screening for inhibitors of chloroplast galactolipid synthesis acting in membrano and in planta.
Methods in Molecular Biology, 2014, 1056: 79-93

Boudière L, Michaud M, Petroutsos D, Rébeillé F, Falconet D, Bastien O, Roy S, Finazzi G, Rolland N, Jouhet J, Block MA and Maréchal E
Glycerolipids in photosynthesis: Composition, synthesis and trafficking.
Biochimica and Biophysica Acta, 2014, 1837: 470-480

Boujemaa-Paterski R, Galland R, Suarez C, Guérin C, Théry M and Blanchoin L
Directed actin assembly and motility In Methods in Enzymology, edited by Ronald DV, Academic Press, 2014, vol. 540, pp 283-300

Boulanger J, Gueudry C, Munch D, Cinquin B, Paul-Gilloteaux P, Bardin S, Guerin C, Senger F, Blanchoin L and Salamero J
Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging.
Proceedings of the National Academy of Sciences, 2014, 111(48): 17164-17169

Boutigny S, Sautron E, Finazzi G, Rivasseau C, Frelet-Barrand A, Pilon M, Rolland N and Seigneurin-Berny D
HMA1 and PAA1, two chloroplast-envelope PIB-ATPases, play distinct roles in chloroplast copper homeostasis.
Journal of Experimental Botany, 2014, 65(6): 1529-1540

Cannella D, Brenier-Pinchart MP, Braun L, van Rooyen JM, Bougdour A, Bastien O, Behnke MS, Curt RL, Curt A, Saeij JP, Sibley LD, Pelloux H and Hakimi MA
miR-146a and miR-155 delineate a characteristic microRNA fingerprint associated with Toxoplasma long-term persistence in the host brain.
Cell Reports, 2014, 6(5): 928-937

Cavailles P, Flori P, Papapietro O, Bisanz C, Lagrange D, Pilloux L, Massera C, Cristinelli S, Jublot D, Bastien O, Loeuillet C, Aldebert D, Touquet B, Fournié GJ and Cesbron-Delauw MF
A highly conserved toxo1 haplotype directs resistance to toxoplasmosis and its associated caspase-1 dependent killing of parasite and host macrophage.
PLoS Pathogens, 2014, 10(4): e1004005

Chaudhry F, Jansen S, Little K, Suarez C, Boujemaa-Paterski R, Blanchoin L and Goode BL
Autonomous and in trans functions for the two halves of Srv2/CAP in promoting actin turnover.
Cytoskeleton (Hoboken), 2014, 71(6): 351-360

Curien G, Cárdenas ML and Cornish-Bowden A
Analytical kinetic modeling: A practical procedure.
Methods in Molecular Biology, 2014, 1090: 261-280

Demé B, Cataye C, Block MA, Maréchal E and Jouhet J
Contribution of galactoglycerolipids to the 3-dimensional architecture of thylakoids.
FASEB Journal, 2014, 28: 3373-3383

Doustaly F, Combes F, Fiévet JB, Berthet S, Hugouvieux V, Bastien O, Aranjuelo I, Leonhardt N, Rivasseau C, Carrière M, Vavasseur A, Renou JP, Vandenbrouck Y and Bourguignon J
Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots.
Metallomics, 2014, 6: 809-821

Ebenhöh O, Fucile G, Finazzi G, Rochaix JD and Goldschmidt-Clermont M
Short-term acclimation of the photosynthetic electron transfer chain to changing light: A mathematical model.
Philosophical Transactions Of The Royal Society B-Biological Sciences, 2014, 369(1640): 20130223

Engelhorn J, Blanvillain R and Carles CC
Gene activation and cell fate control in plants: A chromatin perspective.
Cellular and Molecular Life Sciences, 2014, 71(16): 3119-3137

Engelhorn J, Moreau F, Fletcher JC and Carles CC
ULTRAPETALA1 and LEAFY pathways function independently in specifying identity and determinacy at the Arabidopsis floral meristem.
Annals of Botany, 2014, 114(7): 1497-1505

Finazzi G and Minagawae J
High light acclimation in green microalgae In non-photochemical quenching and thermal energy dissipation In Advances in Photosynthesis and Respiration, edited by Demming-Adams B, Adams III WW, Garab G and Govindjee U, Springer, 2014, vol. 40, Chap. 21, 445-469

Ganem NJ, Cornils H, Chiu SY, O'Rourke KP, Arnaud J, Yimlamai D, Thery M, Camargo FD and Pellman D
Cytokinesis failure triggers hippo tumor suppressor pathway activation.
Cell, 2014, 158(4): 833-848

Gerelli Y, De Ghellinck A, Jouhet J, Laux V, Haertlein M and Fragneto G
Multi-lamellar organization of fully deuterated lipid extracts of yeast membranes.
Acta Crystallographica Section D: Biological Crystallography, 2014, 70(Pt 12): 3167-3176

de Ghellinck A, Schaller H, Laux V, Haertlein M, Sferrazza M, Maréchal E, Wacklin H, Jouhet J and Fragneto G
Production and analysis of perdeuterated lipids from Pichia pastoris cells.
PLoS One, 2014, 9(4):e92999

Gläßer C, Haberer G, Finkemeier I, Pfannschmidt T, Kleine T, Leister D, Dietz KJ, Häusler RE, Grimm B and Mayer KF
Meta-Analysis of Retrograde Signaling in Arabidopsis thaliana reveals a core module of genes embedded in complex cellular signaling networks.
Molecular Plant, 2014, 7(7): 1167-1190

Godinho SA, Picone R, Burute M, Dagher R, Su Y, Leung CT, Polyak K, Brugge JS, Théry M and Pellman D
Oncogene-like induction of cellular invasion from centrosome amplification.
Nature, 2014, 510(7503): 167-171

Gout E, Rébeillé F, Douce R and Bligny R
Interplay of Mg2+, ADP, and ATP in the cytosol and mitochondria: Unravelling the role of Mg2+ in cell respiration.
Proceedings of the National Academy of Sciences USA, 2014, 111(43): E4560-E4567

de Gouvion Saint Cyr D, Wisniewski C, Schrive L, Farhi E and Rivasseau C
Feasibility study of microfiltration for algae separation in an innovative nuclear effluents decontamination process.
Separation and Purification Technology, 2014, 125: 126-135

Graindorge M, Giustini C, Kraut A, Moyet L, Curien G and Matringe M
Three different classes of aminotransferases evolved prephenate aminotransferase functionality in arogenate-competent microorganisms
Journal of Biological Chemistry, 2014, 289(6): 3198-3208

Gurel PS, Ge P, Grintsevich EE, Shu R, Blanchoin L, Zhou ZH, Reisler E and Higgs HN
INF2-mediated severing through actin filament encirclement and disruption.
Current Biology, 2014, 24(2): 156-164

Hardré H, Kuhn L, Albrieux C, Jouhet J, Michaud M, Seigneurin-Berny D, Falconet D, Block MA and Maréchal E
The selective biotin tagging and thermolysin proteolysis of chloroplast outer envelope proteins reveals information on protein topology and association into complexes.
Frontiers in Plant Science, 2014, 5: 203

Johnson GN, Cardol P, Minagawa J and Finazzi G
Regulation of Electron Transport in Photosynthesis. Chapter 16 In: Plastid Biology. (Steve M. Theg and Francis André Wollman Eds), Series Advances in Plant Biology, Springer, 2014, 5: 437-464

Kang H, Bradley MJ, Cao W, Zhou K, Grintsevich EE, Michelot A, Sindelar CV, Hochstrasser M and De La Cruz EM
Site-specific cation release drives actin filament severing by vertebrate cofilin.
Proceedings of the National Academy of Sciences, 2014, 111(50): 17821-17826

Korasick DA, Westfall CS, Lee SG, Nanao MH, Dumas R, Hagen G, Guilfoyle TJ, Jez JM and Strader LC
Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression.
Proceedings of the National Academy of Sciences USA, 2014, 111(14): 5427-5432

Kremneva E, Makkonen MH, Skwarek-Maruszewska A, Gateva G, Michelot A, Dominguez R and Lappalainen P
Cofilin-2 controls actin filament length in muscle sarcomeres.
Developmental Cell, 2014, 31(2): 215-226

Kukuczka B, Magneschi L, Petroutsos D, Steinbeck J, Bald T, Powikrowska M, Fufezan C, Finazzi G and Hippler M
Proton gradient regulation5-like1-mediated cyclic electron flow is crucial for acclimation to anoxia and complementary to nonphotochemical quenching in stress adaptation.
Plant Physiology, 2014, 165(4): 1604-1617

Kuntz M
Is it possible to overcome the GMO controversy? Some elements for a philosophical perspective. In: Plant biotechnology - Experience and future prospects. (A. Ricroch, S. Chopra and S. J. Fleischer, Eds), Springer, 2014, Part II - Chapter 5

Kuntz M
The GMO case in France: Politics, lawlessness and postmodernism.
GM Crops and Food: Biotechnology in Agriculture and the Food Chain, 2014, 5(3): 163-169

Lafanechère L, Maréchal E and Guillemot JC
La chemobiologie : stratégies transfrontalières.
Medecine Sciences Paris, 2014, 30(12): 1059-1060

Lefebvre-Legendre L, Merendino L, Rivier C and Goldschmidt-Clermont M
On the complexity of chloroplast RNA metabolism: psaA trans-splicing can be bypassed in Chlamydomonas.
Molecular Biology and Evolution, 2014, 31(10): 2697-2707

Leonardo T, Farhi E, Boisson AM, Vial J, Cloetens P, Bohic S and Rivasseau C
Determination of elemental distribution in green micro-algae using synchrotron radiation nano X-ray fluorescence (SR-nXRF) and electron microscopy techniques - Subcellular localization and quantitative imaging of silver and cobalt uptake by Coccomyxa actinabiotis.
Metallomics, 2014, 6(2): 316-329

Li J, Staiger BH, Henty-Ridilla JL, Abu-Abied M, Sadot E, Blanchoin L and Staiger CJ
The availability of filament ends modulates actin stochastic dynamics in live plant cells.
Molecular Biology of the Cell, 2014, 25(8): 1263-1275

Mandel T, Moreau F, Kutsher Y, Fletcher JC, Carles CC and Williams LE
The ERECTA receptor kinase regulates Arabidopsis shoot apical meristem size, phyllotaxy and floral meristem identity.
Development, 2014, 141(4): 830-841

Maréchal E and Bastien O
Modeling of regulatory loops controlling galactolipid biosynthesis in the inner envelope membrane of chloroplasts.
Journal of Theoritical Biology, 2014, 361C: 1-13

Mathelier A, Zhao X, Zhang AW, Parcy F, Worsley-Hunt R, Arenillas DJ, Buchman S, Chen CY, Chou A, Ienasescu H, Lim J, Shyr C, Tan G, Zhou M, Lenhard B, Sandelin A and Wasserman WW
JASPAR 2014: An extensively expanded and updated open-access database of transcription factor binding profiles.
Nucleic Acids Research, 2014, 42(1): D142-D147

Michelot A and Drubin DG
Dissecting principles governing actin assembly using yeast extracts In Methods in Enzymology, edited by Ronald DV, Academic Press, 2014, vol. 540, pp 381-397

Moulis JM, Bourguignon J and Catty P
Cadmium In Binding, Transport and Storage of Metal Ions in Biological Cells, edited by Maret M and Wedd A, Royal Society of Chemistry, 2014, Chap. 23, pp 695-746

Nagy G, Unnep R, Zsiros O, Tokutsu R, Takizawa K, Porcar L, Moyet L, Petroutsos D, Garab G, Finazzi G and Minagawa J
Chloroplast remodeling during state transitions in Chlamydomonas reinhardtii as revealed by non-invasive techniques in vivo.
Proceedings of the National Academy of Sciences USA, 2014, 111(13): 5042-5047

Nanao MH, Vinos-Poyo T, Brunoud G, Thevenon E, Mazzoleni M, Mast D, Laine S, Wang S, Hagen G, Li H, Guilfoyle TJ, Parcy F, Vernoux T and Dumas R
Structural basis for oligomerization of auxin transcriptional regulators.
Nature Communications, 2014, 5: 3617
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Petroutsos D, Amiar S, Abida H, Dolch LJ, Bastien O, Rébeillé F, Jouhet J, Falconet D, Block MA, McFadden GI, Bowler C, Botté C and Maréchal E
Evolution of galactoglycerolipid biosynthetic pathways. From cyanobacteria to primary plastids and from primary to secondary plastids.
Progress in Lipid Research, 2014, 54C: 68-85

Portran D
Micropatterning Microtubules In Micropatterning in Cell Biology Part B. Methods in Cell Biology, Edited by Piel M and Thery M, Elsevier, 2014, vol. 120, pp. 39-51

Prevel C, Kurzawa L, Van TNN and Morris MC
Fluorescent biosensors for drug discovery new tools for old targets. Screening for inhibitors of cyclin-dependent kinases.
European Journal of Medicinal Chemistry, 2014, 88: 74-88

Puranik S, Acajjaoui S, Conn S, Costa L, Conn V, Vial A, Marcellin R, Melzer R, Brown E, Hart D, Theißen G, Silva CS, Parcy F, Dumas R, Nanao M and Zubieta C
Structural basis for the oligomerization of the MADS-domain transcription factor SEPALLATA 3.
Plant Cell, 2014, 26(9): 3603-3615

Reymann AC, Guérin C, Théry M, Blanchoin L and Boujemaa-Paterski R
Geometrical Control of Actin Assembly and Contractility In Micropatterning in Cell Biology Part B. Methods in Cell Biology, Edited by Piel M and Thery M, Elsevier, 2014, vol. 120, pp. 19-38

Saïdani N, Botté CY, Deligny M, Bonneau AL, Reader J, Lasselin R, Merer G, Niepceron A, Brossier F, Cintrat JC, Rousseau B, Birkholtz LM, Cesbron-Delauw MF, Dubremetz JF, Mercier C, Vial H, Lopez R and Maréchal E
Discovery of compounds blocking the proliferation of Toxoplasma gondii and Plasmodium falciparum in a chemical space based on piperidinyl-benzimidazolone analogs.
Antimicrob Agents and Chemotherapy, 2014, 58(5): 2586-2597

Sarkis J, Rocha J, Maniti O, Jouhet J, Vie V, Block MA, Breton C, Marechal E and Girard-Egrot A
The influence of lipids on MGD1 membrane binding highlights novel mechanisms for galactolipid biosynthesis regulation in chloroplasts.
FASEB Journal, 2014, 28(7): 3114-3123

Sayou C, Monniaux M, Nanao MH, Moyroud E, Brockington SF, Thévenon E, Chahtane H, Warthmann N, Melkonian M, Zhang Y, Wong GK, Weigel D, Parcy F and Dumas R
A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity.
Science, 2014, 343(6171): 645-648
Abstract - Reprint

Schild F, Kieffer-Jaquinod S, Palencia A, Cobessi D, Sarret G, Zubieta C, Jourdain A, Dumas R, Forge V, Testemale D, Bourguignon J and Hugouvieux V
Biochemical and biophysical characterization of the Selenium binding and reducing site in Arabidopsis thaliana homologue to mammals Selenium Binding Protein 1.
Journal of Biological Chemistry, 2014, 289(46): 31765-31776

Schröter Y, Steiner S, Weisheit W, Mittag M and Pfannschmidt T
A purification strategy for analysis of the DNA/RNA-associated sub-proteome from chloroplasts of mustard cotyledons.
Frontiers in Plant Science, 2014, 5: 557

Stopka SA, Shrestha B, Maréchal E, Falconet D and Vertes A
Metabolic transformation of microalgae due to light acclimation and genetic modifications followed by laser ablation electrospray ionization mass spectrometry with ion mobility separation.
The Analyst, 2014, 139(22): 5945-5953

Théry M
Working in the real and the imaginary.
Molecular Biology of the Cell, 2014, 25(21): 3248-3250

Tomizioli M, Lazar C, Brugiere S, Burger T, Salvi D, Gatto L, Moyet L, Breckels LM, Hesse AM, Lilley KS, Seigneurin-Berny D, Finazzi G, Rolland N and Ferro M
Deciphering thylakoid sub-compartments using a mass spectrometry-based approach.
Molecular and Cellular Proteomics, 2014, 13(8): 2147-2167

Trotta A, Rahikainen M, Konert G, Finazzi G and Kangasjärvi S
Signalling cross-talk in light stress and immune reactions in plants
Philosophical Transactions Of The Royal Society B-Biological Sciences, 2014, 369(1640): 20130235

Vignaud T, Ennomani H and Théry M
Polyacrylamide hydrogel micropatterning In Micropatterning in Cell Biology Part B. Methods in Cell Biology, Edited by Piel M and Thery M, Elsevier, 2014, vol. 120, pp. 93-116

Villiers F, Bastien O and Kwak JM
R. S. WebTool, a web server for random sampling-based significance evaluation of pairwise distances.
Nucleic Acids Research, 2014, 42(W1): W198-W204

Yennek S, Burute M, Théry M and Tajbakhsh S
Cell adhesion geometry regulates non-random DNA segregation and asymmetric cell fates in mouse skeletal muscle stem cells.
Cell Reports, 2014, 7(4): 961-970